CellDrift Tutorial

CellDrift is a python package for the evaluation of temporal perturbation effects using single-cell RNA-seq data.

• Get to know more about the background the project.

• Discuss usage on Discourse and development on GitHub.

• Get started by browsing tutorials, usage principles or the main API.

• Check out our contributing guide for development practices.

• Consider citing the original paper bioRxiv (2022).

• Introduction
  • Why do we develop CellDrift?
  • What is the appropriate input data?
  • What is the expected output?
• Installation
  • Prerequisite
  • Installation
• Tutorial
  • HIV Infection Study
• API
  • setup_celldrift
  • model_timescale
  • fda_cluster
  • draw_smoothing
  • draw_smoothing_clusters
• Reference
  • ciation
• Related Research
• Contact